IL_6R7Q_027

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6R7Q|1|5|G|666, 6R7Q|1|5|A|667, 6R7Q|1|5|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_027 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.182

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

6R7Q|1|5|G|487
6R7Q|1|5|G|488
*
6R7Q|1|5|C|665
6R7Q|1|5|G|666
6R7Q|1|5|A|667
6R7Q|1|5|C|668
6R7Q|1|5|C|669

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Q

eL18

Chain r

eL28