IL_6R7Q_041

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6R7Q|1|5|C|1214, 6R7Q|1|5|C|1215

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_041 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2884

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6R7Q|1|5|C|1082
6R7Q|1|5|U|1083
6R7Q|1|5|C|1084
*
6R7Q|1|5|G|1213
6R7Q|1|5|C|1214
6R7Q|1|5|C|1215
6R7Q|1|5|C|1216
6R7Q|1|5|G|1217

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain F

uL30

Chain b

eL29