IL_6R7Q_111

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_111 not in the Motif Atlas

Homologous match to IL_8C3A_091

Geometric discrepancy: 0.261

The information below is about IL_8C3A_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6R7Q|1|5|C|3708
6R7Q|1|5|U|3709
6R7Q|1|5|G|3710
*
6R7Q|1|5|C|3741
6R7Q|1|5|G|3742

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

uL2

Chain K

Small subunit ribosomal RNA; SSU rRNA