IL_6R7Q_118

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUG*CAC

Length

7 nucleotides

Bulged bases

6R7Q|1|5|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_118 not in the Motif Atlas

Geometric match to IL_4KQ0_005

Geometric discrepancy: 0.244

The information below is about IL_4KQ0_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6R7Q|1|5|G|3913
6R7Q|1|5|U|3914
6R7Q|1|5|U|3915
6R7Q|1|5|G|3916
*
6R7Q|1|5|C|4387
6R7Q|1|5|A|4388
6R7Q|1|5|C|4389

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 1

X-box-binding protein 1

Chain C

uL4

Chain a

uL15