IL_6R7Q_135

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6R7Q|1|5|A|4518, 6R7Q|1|5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_135 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.1035

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6R7Q|1|5|C|4458
6R7Q|1|5|U|4459
*
6R7Q|1|5|A|4517
6R7Q|1|5|A|4518
6R7Q|1|5|C|4519
6R7Q|1|5|G|4520

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

eL14