IL_6R7Q_141

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6R7Q|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_141 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3154

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6R7Q|1|5|C|4582
6R7Q|1|5|C|4583
6R7Q|1|5|A|4584
6R7Q|1|5|U|4585
*
6R7Q|1|5|A|4717
6R7Q|1|5|G|4718
6R7Q|1|5|G|4719
6R7Q|1|5|C|4720
6R7Q|1|5|G|4721

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13