IL_6R7Q_160

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6R7Q|1|5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_160 not in the Motif Atlas

Homologous match to IL_8C3A_140

Geometric discrepancy: 0.3877

The information below is about IL_8C3A_140

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6R7Q|1|5|G|5012
6R7Q|1|5|C|5013
6R7Q|1|5|A|5014
*
6R7Q|1|5|U|5035
6R7Q|1|5|C|5036

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain W

Ribosomal protein L24