IL_6R7Q_161

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_161 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.164

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6R7Q|1|5|A|5014
6R7Q|1|5|G|5015
6R7Q|1|5|A|5016
6R7Q|1|5|G|5017
*
6R7Q|1|5|C|5032
6R7Q|1|5|G|5033
6R7Q|1|5|A|5034
6R7Q|1|5|U|5035

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain R

eL19