IL_6R7Q_178

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_178 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1694

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6R7Q|1|K|U|110
6R7Q|1|K|A|111
6R7Q|1|K|U|112
*
6R7Q|1|K|A|349
6R7Q|1|K|C|350
6R7Q|1|K|G|351

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain EE

Ribosomal protein S11

Chain x

40S ribosomal protein S4