IL_6R7Q_180

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_180 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1523

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6R7Q|1|K|U|116
6R7Q|1|K|C|117
6R7Q|1|K|C|118
6R7Q|1|K|U|119
6R7Q|1|K|U|120
6R7Q|1|K|U|121
*
6R7Q|1|K|A|343
6R7Q|1|K|U|344
6R7Q|1|K|U|345
6R7Q|1|K|C|346
6R7Q|1|K|G|347

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain CC

40S ribosomal protein S8

Chain x

40S ribosomal protein S4