IL_6R7Q_188

3D structure

PDB id

6R7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R7Q_188 not in the Motif Atlas

Geometric match to IL_5TBW_009

Geometric discrepancy: 0.2655

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6R7Q|1|K|C|317
6R7Q|1|K|A|318
6R7Q|1|K|C|319
*
6R7Q|1|K|G|332
6R7Q|1|K|G|333

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain W

Ribosomal protein L24

Chain z

40S ribosomal protein S6