IL_6R84_048
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 6R84|1|1|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R84_048 not in the Motif Atlas
- Geometric match to IL_7A0S_035
- Geometric discrepancy: 0.171
- The information below is about IL_7A0S_035
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 149
Unit IDs
6R84|1|1|A|1180
6R84|1|1|U|1181
6R84|1|1|A|1182
*
6R84|1|1|U|1324
6R84|1|1|U|1325
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain J
- 60S ribosomal protein L7-A
- Chain Q
- 60S ribosomal protein L16-A
- Chain U
- 60S ribosomal protein L20-A
- Chain h
- 60S ribosomal protein L33-A
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