IL_6R84_096

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6R84|1|1|A|2397, 6R84|1|1|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R84_096 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.0971

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6R84|1|1|G|2396
6R84|1|1|A|2397
6R84|1|1|A|2398
*
6R84|1|1|U|2981
6R84|1|1|A|2982
6R84|1|1|C|2983
6R84|1|1|C|2984

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 5

60S ribosomal protein L17-A

Chain F

60S ribosomal protein L3