IL_6R84_112

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGUGG*CUUUUUG

Length

13 nucleotides

Bulged bases

6R84|1|1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R84|1|1|U|2826
6R84|1|1|U|2827
6R84|1|1|G|2828
6R84|1|1|U|2829
6R84|1|1|G|2830
6R84|1|1|G|2831
*
6R84|1|1|C|2857
6R84|1|1|U|2858
6R84|1|1|U|2859
6R84|1|1|U|2860
6R84|1|1|U|2861
6R84|1|1|U|2862
6R84|1|1|G|2863

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain R

Protein VMS1,Vms1,Protein VMS1,Vms1

Chain s

60S ribosomal protein L10