IL_6R84_120
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 6R84|1|1|A|2971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R84_120 not in the Motif Atlas
- Homologous match to IL_9H3G_126
- Geometric discrepancy: 0.4225
- The information below is about IL_9H3G_126
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.5
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 188
Unit IDs
6R84|1|1|C|2960
6R84|1|1|G|2961
*
6R84|1|1|C|2970
6R84|1|1|A|2971
6R84|1|1|G|2972
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- ABC transporter ATP-binding protein ARB1
- Chain B
- Transfer RNA; tRNA
- Chain E
- 60S ribosomal protein L2-A
- Chain R
- Protein VMS1,Vms1,Protein VMS1,Vms1
- Chain s
- 60S ribosomal protein L10
Coloring options: