IL_6R84_155

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R84_155 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.3227

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6R84|1|1|U|177
6R84|1|1|U|178
*
6R84|1|1|A|238
6R84|1|1|G|239
6R84|1|1|U|240
6R84|1|1|G|241

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain j

60S ribosomal protein L35-A

Chain l

60S ribosomal protein L37-A