IL_6R84_159

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAGACGCAGCGG*CUUGUUGUAGACGG

Length

27 nucleotides

Bulged bases

6R84|1|1|U|2044, 6R84|1|1|C|2050

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R84|1|1|U|1970
6R84|1|1|C|1971
6R84|1|1|A|1972
6R84|1|1|G|1973
6R84|1|1|A|1974
6R84|1|1|C|1975
6R84|1|1|G|1976
6R84|1|1|C|1977
6R84|1|1|A|1978
6R84|1|1|G|1979
6R84|1|1|C|1980
6R84|1|1|G|1981
6R84|1|1|G|1982
*
6R84|1|1|C|2039
6R84|1|1|U|2040
6R84|1|1|U|2041
6R84|1|1|G|2042
6R84|1|1|U|2043
6R84|1|1|U|2044
6R84|1|1|G|2045
6R84|1|1|U|2046
6R84|1|1|A|2047
6R84|1|1|G|2048
6R84|1|1|A|2049
6R84|1|1|C|2050
6R84|1|1|G|2051
6R84|1|1|G|2052

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

60S ribosomal protein L27-A