IL_6R84_162
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGA*UUUAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R84_162 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.3434
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
6R84|1|1|G|2435
6R84|1|1|U|2436
6R84|1|1|G|2437
6R84|1|1|A|2438
*
6R84|1|1|U|2508
6R84|1|1|U|2509
6R84|1|1|U|2510
6R84|1|1|A|2511
6R84|1|1|C|2512
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L2-A
- Chain K
- 60S ribosomal protein L8-A
- Chain k
- 60S ribosomal protein L36-A
- Chain p
- 60S ribosomal protein L15-A
Coloring options: