IL_6R86_010

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R86_010 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.259

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6R86|1|1|U|177
6R86|1|1|U|178
*
6R86|1|1|A|238
6R86|1|1|G|239
6R86|1|1|U|240
6R86|1|1|G|241

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain j

60S ribosomal protein L35-A

Chain l

60S ribosomal protein L37-A