IL_6R86_053

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6R86|1|1|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R86_053 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3516

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6R86|1|1|G|1234
6R86|1|1|U|1235
6R86|1|1|G|1236
6R86|1|1|G|1237
6R86|1|1|C|1238
*
6R86|1|1|G|1250
6R86|1|1|A|1251
6R86|1|1|A|1252
6R86|1|1|U|1253
6R86|1|1|C|1254

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L12-A