IL_6R86_098

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R86_098 not in the Motif Atlas

Geometric match to IL_5TBW_375

Geometric discrepancy: 0.2578

The information below is about IL_5TBW_375

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6R86|1|1|A|2441
6R86|1|1|G|2442
6R86|1|1|A|2443
*
6R86|1|1|U|2504
6R86|1|1|U|2505

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L8-A

Chain k

60S ribosomal protein L36-A

Chain p

60S ribosomal protein L15-A