3D structure

PDB id
6R86 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast Vms1-60S ribosomal subunit complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CAUAGAGGGUGUAGAAUAA*UACCUUUAUAG
Length
30 nucleotides
Bulged bases
6R86|1|1|A|2458
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6R86|1|1|C|2444
6R86|1|1|A|2445
6R86|1|1|U|2446
6R86|1|1|A|2447
6R86|1|1|G|2448
6R86|1|1|A|2449
6R86|1|1|G|2450
6R86|1|1|G|2451
6R86|1|1|G|2452
6R86|1|1|U|2453
6R86|1|1|G|2454
6R86|1|1|U|2455
6R86|1|1|A|2456
6R86|1|1|G|2457
6R86|1|1|A|2458
6R86|1|1|A|2459
6R86|1|1|U|2460
6R86|1|1|A|2461
6R86|1|1|A|2462
*
6R86|1|1|U|2493
6R86|1|1|A|2494
6R86|1|1|C|2495
6R86|1|1|C|2496
6R86|1|1|U|2497
6R86|1|1|U|2498
6R86|1|1|U|2499
6R86|1|1|A|2500
6R86|1|1|U|2501
6R86|1|1|A|2502
6R86|1|1|G|2503

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain K
60S ribosomal protein L8-A
Chain L
60S ribosomal protein L1-A
Chain k
60S ribosomal protein L36-A
Chain p
60S ribosomal protein L15-A

Coloring options:

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