IL_6R86_154

3D structure

PDB id

6R86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1-60S ribosomal subunit complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6R86|1|1|C|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R86_154 not in the Motif Atlas

Homologous match to IL_8P9A_297

Geometric discrepancy: 0.1479

The information below is about IL_8P9A_297

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6R86|1|1|C|1669
6R86|1|1|C|1670
*
6R86|1|1|G|1778
6R86|1|1|C|1779
6R86|1|1|G|1780

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L19-A

Chain i

60S ribosomal protein L34-A