3D structure

PDB id
6R86 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast Vms1-60S ribosomal subunit complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GAGCCUUG*CUUGGUC
Length
15 nucleotides
Bulged bases
6R86|1|1|A|1962, 6R86|1|1|G|1963
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6R86|1|1|G|1961
6R86|1|1|A|1962
6R86|1|1|G|1963
6R86|1|1|C|1964
6R86|1|1|C|1965
6R86|1|1|U|1966
6R86|1|1|U|1967
6R86|1|1|G|1968
*
6R86|1|1|C|2054
6R86|1|1|U|2055
6R86|1|1|U|2056
6R86|1|1|G|2057
6R86|1|1|G|2058
6R86|1|1|U|2059
6R86|1|1|C|2080

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain m
60S ribosomal protein L38

Coloring options:

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