IL_6R87_002

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6R87|1|1|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_002 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1731

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6R87|1|1|A|13
6R87|1|1|U|14
6R87|1|1|C|15
*
6R87|1|4|G|144
6R87|1|4|U|145

Current chains

Chain 1

25S rRNA

Chain 4

5.8S rRNA

Nearby chains

Chain K

60S ribosomal protein L8-A

Chain Z

60S ribosomal protein L25

Chain p

60S ribosomal protein L15-A