IL_6R87_009

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

6R87|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_009 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.4059

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6R87|1|1|U|169
6R87|1|1|G|170
*
6R87|1|1|U|248
6R87|1|1|U|249
6R87|1|1|U|250
6R87|1|1|G|251
6R87|1|1|U|252
6R87|1|1|A|253

Current chains

Chain 1

25S rRNA

Nearby chains

Chain K

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L13-A

Chain j

60S ribosomal protein L35-A