IL_6R87_010

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_010 not in the Motif Atlas

Geometric match to IL_4KQY_004

Geometric discrepancy: 0.3371

The information below is about IL_4KQY_004

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6R87|1|1|U|177
6R87|1|1|U|178
*
6R87|1|1|A|238
6R87|1|1|G|239
6R87|1|1|U|240
6R87|1|1|G|241

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L13-A

Chain j

60S ribosomal protein L35-A

Chain l

60S ribosomal protein L37-A