3D structure

PDB id
6R87 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
AA*UUU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R87_038 not in the Motif Atlas
Homologous match to IL_5TBW_039
Geometric discrepancy: 0.1396
The information below is about IL_5TBW_039
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

6R87|1|1|A|997
6R87|1|1|A|998
*
6R87|1|1|U|1050
6R87|1|1|U|1051
6R87|1|1|U|1052

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain H
60S ribosomal protein L5
Chain V
60S ribosomal protein L21-A
Chain s
60S ribosomal protein L10

Coloring options:


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