IL_6R87_040

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_040 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.1486

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6R87|1|1|A|1006
6R87|1|1|U|1007
6R87|1|1|U|1008
6R87|1|1|A|1009
*
6R87|1|1|U|1041
6R87|1|1|U|1042
6R87|1|1|C|1043
6R87|1|1|U|1044

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L5

Chain s

60S ribosomal protein L10