IL_6R87_083

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGCCUUG*CUUGGUC

Length

15 nucleotides

Bulged bases

6R87|1|1|A|1962, 6R87|1|1|G|1963, 6R87|1|1|G|2058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R87|1|1|G|1961
6R87|1|1|A|1962
6R87|1|1|G|1963
6R87|1|1|C|1964
6R87|1|1|C|1965
6R87|1|1|U|1966
6R87|1|1|U|1967
6R87|1|1|G|1968
*
6R87|1|1|C|2054
6R87|1|1|U|2055
6R87|1|1|U|2056
6R87|1|1|G|2057
6R87|1|1|G|2058
6R87|1|1|U|2059
6R87|1|1|C|2080

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

60S ribosomal protein L27-A