IL_6R87_084

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_084 not in the Motif Atlas

Geometric match to IL_4ZNP_002

Geometric discrepancy: 0.2681

The information below is about IL_4ZNP_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6R87|1|1|C|1988
6R87|1|1|U|1989
6R87|1|1|U|1990
6R87|1|1|G|1991
*
6R87|1|1|C|2030
6R87|1|1|U|2031
6R87|1|1|U|2032
6R87|1|1|G|2033

Current chains

Chain 1

25S rRNA

Nearby chains