IL_6R87_090

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6R87|1|1|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_090 not in the Motif Atlas

Geometric match to IL_6MWN_006

Geometric discrepancy: 0.2384

The information below is about IL_6MWN_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6R87|1|1|C|2204
6R87|1|1|U|2205
6R87|1|1|G|2206
*
6R87|1|1|C|2237
6R87|1|1|G|2238

Current chains

Chain 1

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L2-A