IL_6R87_098

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6R87|1|1|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_098 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0982

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6R87|1|1|G|2412
6R87|1|1|A|2413
*
6R87|1|1|U|2807
6R87|1|1|A|2808
6R87|1|1|C|2809
6R87|1|1|C|2810

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain E

60S ribosomal protein L2-A