IL_6R87_106

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

6R87|1|1|C|2772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_106 not in the Motif Atlas

Homologous match to IL_8C3A_110

Geometric discrepancy: 0.2285

The information below is about IL_8C3A_110

Detailed Annotation

Single stack bend with bulge

Broad Annotation

Single stack bend with bulge

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6R87|1|1|G|2770
6R87|1|1|U|2771
6R87|1|1|C|2772
6R87|1|1|C|2773
*
6R87|1|1|G|2787
6R87|1|1|C|2788

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L42-A

Chain N

60S ribosomal protein L13-A

Chain S

60S ribosomal protein L18-A

Chain c

60S ribosomal protein L28