IL_6R87_118

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6R87|1|1|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_118 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.2448

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6R87|1|1|C|2960
6R87|1|1|G|2961
*
6R87|1|1|C|2970
6R87|1|1|A|2971
6R87|1|1|G|2972

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain E

60S ribosomal protein L2-A

Chain R

Protein VMS1,Vms1,Protein VMS1,Vms1