IL_6R87_140

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_140 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.2041

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6R87|1|1|A|3342
6R87|1|1|G|3343
6R87|1|1|A|3344
6R87|1|1|G|3345
*
6R87|1|1|C|3360
6R87|1|1|G|3361
6R87|1|1|A|3362
6R87|1|1|U|3363

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

Protein VMS1,Vms1,Protein VMS1,Vms1

Chain T

60S ribosomal protein L19-A