IL_6R87_160

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCAAG*CGACAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R87|1|1|G|2834
6R87|1|1|U|2835
6R87|1|1|C|2836
6R87|1|1|A|2837
6R87|1|1|A|2838
6R87|1|1|G|2839
*
6R87|1|1|C|2849
6R87|1|1|G|2850
6R87|1|1|A|2851
6R87|1|1|C|2852
6R87|1|1|A|2853
6R87|1|1|U|2854

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

Protein VMS1,Vms1,Protein VMS1,Vms1

Chain o

Ubiquitin-60S ribosomal protein L40

Chain s

60S ribosomal protein L10