IL_6R87_164

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAGA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R87_164 not in the Motif Atlas

Geometric match to IL_8C3A_403

Geometric discrepancy: 0.3648

The information below is about IL_8C3A_403

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86374.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6R87|1|1|A|2438
6R87|1|1|A|2439
6R87|1|1|G|2440
6R87|1|1|A|2441
*
6R87|1|1|U|2505
6R87|1|1|U|2506
6R87|1|1|C|2507
6R87|1|1|U|2508

Current chains

Chain 1

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L36-A