IL_6RBD_031

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AG*CGCGGUAAUUCCAGCU

Length

18 nucleotides

Bulged bases

6RBD|1|2|U|578, 6RBD|1|2|A|579, 6RBD|1|2|U|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|A|550
6RBD|1|2|G|551
*
6RBD|1|2|C|573
6RBD|1|2|G|574
6RBD|1|2|C|575
6RBD|1|2|G|576
6RBD|1|2|G|577
6RBD|1|2|U|578
6RBD|1|2|A|579
6RBD|1|2|A|580
6RBD|1|2|U|581
6RBD|1|2|U|582
6RBD|1|2|C|583
6RBD|1|2|C|584
6RBD|1|2|A|585
6RBD|1|2|G|586
6RBD|1|2|C|587
6RBD|1|2|U|588

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A

Chain k

Ribosome biogenesis protein TSR1

Chain l

Serine/threonine-protein kinase RIO2