IL_6RBD_046

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6RBD|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_046 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1408

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6RBD|1|2|G|867
6RBD|1|2|G|868
6RBD|1|2|A|869
6RBD|1|2|C|870
*
6RBD|1|2|G|957
6RBD|1|2|U|958
6RBD|1|2|U|959
6RBD|1|2|U|960
6RBD|1|2|U|961

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27-A