IL_6RBD_050

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6RBD|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_050 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2232

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6RBD|1|2|U|893
6RBD|1|2|U|894
6RBD|1|2|G|895
6RBD|1|2|U|896
6RBD|1|2|C|897
6RBD|1|2|A|898
6RBD|1|2|G|899
*
6RBD|1|2|C|910
6RBD|1|2|U|911
6RBD|1|2|U|912
6RBD|1|2|G|913
6RBD|1|2|G|914
6RBD|1|2|A|915
6RBD|1|2|U|916
6RBD|1|2|U|917
6RBD|1|2|U|918
6RBD|1|2|A|919

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S14-A