IL_6RBD_073
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 6RBD|1|2|A|1493, 6RBD|1|2|A|1516
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RBD_073 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.1935
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6RBD|1|2|G|1488
6RBD|1|2|U|1489
6RBD|1|2|C|1490
6RBD|1|2|U|1491
6RBD|1|2|A|1492
6RBD|1|2|A|1493
6RBD|1|2|C|1494
*
6RBD|1|2|G|1513
6RBD|1|2|U|1514
6RBD|1|2|A|1515
6RBD|1|2|A|1516
6RBD|1|2|U|1517
6RBD|1|2|C|1518
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain T
- 40S ribosomal protein S19-A
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29-A
- Chain i
- Essential nuclear protein 1
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