IL_6RBD_075

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_075 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1362

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6RBD|1|2|G|1540
6RBD|1|2|G|1541
6RBD|1|2|G|1542
6RBD|1|2|A|1543
6RBD|1|2|U|1544
6RBD|1|2|A|1545
*
6RBD|1|2|U|1566
6RBD|1|2|U|1567
6RBD|1|2|C|1568
6RBD|1|2|A|1569
6RBD|1|2|A|1570
6RBD|1|2|C|1571

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S18-A

Chain T

40S ribosomal protein S19-A

Chain l

Serine/threonine-protein kinase RIO2