IL_6RBD_091

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AAUAAGGAUUG*CUUGAUUUU

Length

20 nucleotides

Bulged bases

6RBD|1|2|G|1228, 6RBD|1|2|U|1257

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|A|1223
6RBD|1|2|A|1224
6RBD|1|2|U|1225
6RBD|1|2|A|1226
6RBD|1|2|A|1227
6RBD|1|2|G|1228
6RBD|1|2|G|1229
6RBD|1|2|A|1230
6RBD|1|2|U|1231
6RBD|1|2|U|1232
6RBD|1|2|G|1233
*
6RBD|1|2|C|1252
6RBD|1|2|U|1253
6RBD|1|2|U|1254
6RBD|1|2|G|1255
6RBD|1|2|A|1256
6RBD|1|2|U|1257
6RBD|1|2|U|1258
6RBD|1|2|U|1259
6RBD|1|2|U|1260

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain M

40S ribosomal protein S12

Chain i

Essential nuclear protein 1