IL_6RBD_092

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGC*GAUG

Length

7 nucleotides

Bulged bases

6RBD|1|2|A|1436

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_092 not in the Motif Atlas

Geometric match to IL_4V88_424

Geometric discrepancy: 0.3132

The information below is about IL_4V88_424

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6RBD|1|2|U|1272
6RBD|1|2|G|1273
6RBD|1|2|C|1274
*
6RBD|1|2|G|1435
6RBD|1|2|A|1436
6RBD|1|2|U|1437
6RBD|1|2|G|1438

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain i

Essential nuclear protein 1

Chain k

Ribosome biogenesis protein TSR1