IL_6RBD_094

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGCCC*GUAACAAG

Length

13 nucleotides

Bulged bases

6RBD|1|2|U|1761, 6RBD|1|2|A|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBD|1|2|C|1637
6RBD|1|2|G|1638
6RBD|1|2|C|1639
6RBD|1|2|C|1640
6RBD|1|2|C|1641
*
6RBD|1|2|G|1760
6RBD|1|2|U|1761
6RBD|1|2|A|1762
6RBD|1|2|A|1763
6RBD|1|2|C|1764
6RBD|1|2|A|1765
6RBD|1|2|A|1766
6RBD|1|2|G|1767

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain l

Serine/threonine-protein kinase RIO2

Chain y

Dimethyladenosine transferase