IL_6RI5_014
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6RI5|1|A|A|398, 6RI5|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RI5_014 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1107
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6RI5|1|A|G|376
6RI5|1|A|A|377
6RI5|1|A|A|378
6RI5|1|A|C|379
*
6RI5|1|A|G|390
6RI5|1|A|A|391
6RI5|1|A|G|392
6RI5|1|A|U|393
6RI5|1|A|G|394
6RI5|1|A|A|395
6RI5|1|A|A|396
6RI5|1|A|A|397
6RI5|1|A|A|398
6RI5|1|A|A|399
6RI5|1|A|G|400
6RI5|1|A|U|401
6RI5|1|A|A|402
6RI5|1|A|C|403
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain U
- 60S ribosomal protein L17-A
- Chain X
- 60S ribosomal protein L26-A
- Chain k
- 60S ribosomal protein L39
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
Coloring options: