IL_6RI5_063

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6RI5|1|A|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_063 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.3454

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6RI5|1|A|G|1623
6RI5|1|A|G|1624
*
6RI5|1|A|U|1819
6RI5|1|A|U|1820
6RI5|1|A|U|1821
6RI5|1|A|C|1822

Current chains

Chain A

25S RNA

Nearby chains

Chain g

60S ribosomal protein L34-A