3D structure

PDB id
6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UAG*UGGG
Length
7 nucleotides
Bulged bases
6RI5|1|A|G|2606
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6RI5_092 not in the Motif Atlas
Homologous match to IL_8C3A_100
Geometric discrepancy: 0.1344
The information below is about IL_8C3A_100
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38958.10
Basepair signature
cWW-cWW-cWW-tHS
Number of instances in this motif group
9

Unit IDs

6RI5|1|A|U|2423
6RI5|1|A|A|2424
6RI5|1|A|G|2425
*
6RI5|1|A|U|2604
6RI5|1|A|G|2605
6RI5|1|A|G|2606
6RI5|1|A|G|2607

Current chains

Chain A
25S RNA

Nearby chains

Chain B
60S ribosomal protein L2-A
Chain O
60S ribosomal protein L15-A
Chain l
60S ribosomal protein L42-A

Coloring options:


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