IL_6RI5_095

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGGGUGUAGAAUAAGUG*CCACUACCUU

Length

28 nucleotides

Bulged bases

6RI5|1|A|A|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RI5|1|A|G|2448
6RI5|1|A|A|2449
6RI5|1|A|G|2450
6RI5|1|A|G|2451
6RI5|1|A|G|2452
6RI5|1|A|U|2453
6RI5|1|A|G|2454
6RI5|1|A|U|2455
6RI5|1|A|A|2456
6RI5|1|A|G|2457
6RI5|1|A|A|2458
6RI5|1|A|A|2459
6RI5|1|A|U|2460
6RI5|1|A|A|2461
6RI5|1|A|A|2462
6RI5|1|A|G|2463
6RI5|1|A|U|2464
6RI5|1|A|G|2465
*
6RI5|1|A|C|2489
6RI5|1|A|C|2490
6RI5|1|A|A|2491
6RI5|1|A|C|2492
6RI5|1|A|U|2493
6RI5|1|A|A|2494
6RI5|1|A|C|2495
6RI5|1|A|C|2496
6RI5|1|A|U|2497
6RI5|1|A|U|2498

Current chains

Chain A

25S RNA

Nearby chains

Chain p

uL1

Chain w

60S ribosomal export protein NMD3